ASSESSMENT  OF  GENETIC  DIVERSITY  AND  RELATIONSHIPS  AMONG  GRAPEVINE  CULTIVARS  ORIGINATING  IN  CENTRAL  AND  EASTERN  EUROPE  AND  NORTH  AMERICA  USING  ISSR  MARKERS

Anna Lisek; Jerzy Lisek

doi:10.24326/asphc.2019.5.14

Tom 18 Nr 5 (2019)

Artykuły

ASSESSMENT OF GENETIC DIVERSITY AND RELATIONSHIPS AMONG GRAPEVINE CULTIVARS ORIGINATING IN CENTRAL AND EASTERN EUROPE AND NORTH AMERICA USING ISSR MARKERS

Anna Lisek⁺⁻
Jerzy Lisek⁺⁻

PDF (English)

DOI: https://doi.org/10.24326/asphc.2019.5.14
Przesłane: 29 października 2019
Opublikowane: 2019-10-29

Abstrakt

The study shows genetic diversity of 38 Vitis vinifera L. cultivars and hybrids originating in North America and Europe, including cultivars selected in Poland, which have not been characterized with the use of DNA markers yet. The agrobiological features of the genotypes selected for testing, indicate that they may be useful for the breeding of new cultivars and grape production. The use of 12 ISSR primers allowed to obtain 94.4% of polymorphism. The polymorphic information content (PIC) value was high and varied between 0.829 and 0.953 with an average of 0.897. The resolving power (Rp) ranged between 3.678 and 8.892 with an average of 6.347. Primers UBC 809, UBC 810, UBC 812, UBC 855, UBC 891 and UBC 810 were found to be highly effective (informative). Similarity coefficient ranged between 0.167 and 1.0, which indicates high degree of diversity of tested grape cultivars. Tested cultivars were grouped in 3 main clusters; one of them was further divided into 6 subclusters. ‘Pannonia Kincse’ and ‘Danmarpa Polonia’ were not differentiated. Phenotypic differences among those two cultivars suggest that ‘Danmarpa Polonia’ might be a clone of ‘Pannonia Kincse’ and other molecular techniques must be used to differentiate them. Morphological and agrobiological characters of cultivars support the results obtained by ISSR markers.

Bibliografia

Abuzov, M. (2009). Atlas of northern grapevine. KFH Pitomnik. Smoleńsk, 165 pp. [in Russian].
Alba, V., Anaclerio, A., Gasparro, M., Caputo, A.R., Montemurro, C., Blanco, A., Antonacci, D. (2016) Ampelographic and molecular characterisation of Aglianico accessions (Vitis vinifera L.) collected in southern Italy. S. Afr. J. Enol. Vitic., 32, 164–173.
Argade, N.C., Tamhankar, S.A., Karibasappa, G.S., Patil, S.G., Rao, V.S. (2009). DNA profiling and assessment of genetic relationships among important seedless grape (Vitis vinifera) varieties in India using ISSR markers. J. Plant Biochem. Biot., 18, 45–51.
Baneh, H.D., Mohammadi, S.A., Mahmoudzadeh, H., De Mattia, F., Labra, M. (2016). Analysis of SSR and AFLP markers to detect genetic diversity among selected clones of grapevine (Vitis vinifera L.) cv. Keshmeshi. S. Afr. J. Enol. Vitic., 30, 38–42.
Botstein, D., White, R.L., Skolnick, M., Davis, R.W. (1980). Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am. J. Hum. Genet., 32, 314.
Benjak, A., Ercisli, S., Vokurka, A., Maletić, E., Pejić, I. (2005). Genetic relationships among grapevine cultivars native to Croatia, Grece and Turkey. Vitis, 44, 73–77.
Choudhary, R.S., Zagade, V., Khalakar, G.D., Singh, N.K. (2014). ISSR based genotypic differentiation of grape (Vitis vinifera L.). Bioscan, 9, 823.
Cipriani, G., Spadotto, A., Jurman, I., Di Gaspero, G., Crespan, M., Meneghetti, S., Frare, E., Vignani, R., Cresti, M., Morgante, M., Pezotti, M., Pe, E., Policriti, A., Testolin, R. (2010). The SSR-based molecular profile of 1005 grapevine (Vitis vinifera L.) accessions uncovers new synonymy and parentages, and reveals a large admixture amongst varieties of different geographic origin. Theor. Appl. Genet., 121, 1569–1585.
Dhane, M., Tamhankar, S.A., Patil, S.G., Karibasappa, G.S., Rao, V.S. (2006). Assessment of genetic diversity and relationships among some grape varieties using ISSR markers. J. Appl. Hortic., 8(1), 50–52.
Dhanokar, V. M., Tamhankar, S.A., Patil, S.G., Rao, V.S. (2005). ISSR-PCR for assessment of genetic relationships among grape varieties cultivated in India. Vitis, 44, 127–131.
Di Gaspero, G., Peterlunger, E., Testolin, R., Edwards, K.J., Cipriani, G. (2000). Conservation of microsatellite loci within the genus Vitis. Theor. Appl. Genet., 101, 301–308.
Dong, Z., Liu, W., Li, X., Tan, W., Zhao, Q., Wang, M., Ren, R., Ma, X., Tang, X. (2018). Genetic relationships of 34 grapevine varieties and construction of molecular fingerprints by SSR markers. Biotechnol. Biotec. EQ, 1–9, https://doi.org/10.1080/13102818.2018.1450162
D’Onofrio, C., De Lorenzis, G., Giordani, T., Natali, L., Cavallini, A., Scalabrelli, G. (2010). Retrotransposon-based molecular markers for grapevine species and cultivars identification. Tree Genet. Genomes., 6, 451–466.
Fanizza, G., Colonna, G., Resta, P., Ferrara, G. (1999). The effect of the number of RAPD markers on the evaluation of genotypic distances in Vitis vinifera. Euphytica, 107, 45–50.
Gąstoł, M. (2015). Vineyard performance and fruit quality of some interspecific grapevine cultivars in cool climate conditions. Folia Hort., 27, 21–31.
Guo, D., Zhang, J., Liu, C., Zhang, G., Li, M., Zhang, Q. (2012). Genetic variability and relationships between and within grape cultivated varieties and wild species based on SRAP markers. Tree Genet. Genomes, 8, 789–800.
Halász, G., Veres, A., Kozma, P., Kiss, E., Balogh, A., Galli, Z., Szőke, A., Hoffmann, S., Heszky, L. (2005). Microsatellite fingerprinting of grapevine (Vitis vinifera L.) varieties of the Carpathian Basin. Vitis, 44, 173–180.
Herrera, R., Cares, V., Wilkinson, M.J., Caligari, P.D.S. (2002). Characterisation of genetic variation between Vitis vinifera cultivars from central Chile using RAPD and Inter Simple Sequence Repeat markers. Euphytica, 124, 139–145.
HORT 3040. (2016). A review of cold climate grape cultivars. Iowa State University, Extension and Outreach. Available: <https://store.extension.iastate.edu/Product/A-Review-of-Cold-Climate-Grape-Cultivars-pdf> [date of access: 04.04.2018]
Huang, H., Lu, J., Ren, Z., Hunter, W., Dowd, S.E., Dang, P. (2011). Mining and validating grape (Vitis L.) ESTs to develop EST-SSR markers for genotyping and mapping. Mol. Breeding, 28, 241–254.
Jahnke, G., Májer, J., Lakatos, A., Molnár, J. G., Deák, E., Stefanovits-Bányai, É., Varga, P., (2009). Isoenzyme and microsatellite analysis of Vitis vinifera L. varieties from the Hungarian grape germplasm. Sci. Hortic.-Amsterdam, 120, 213–221.
Jing, Z., Wang, X. (2013). Genetic relationship between Chinese wild Vitis species and American and European cultivars based on ISSR markers. Biochem. Syst. Ecol., 46, 120–126.
Kalendar, R., Grob, T., Regina, M., Suoniemi, A., Schulman, A. (1999). IRAP and REMAP: two new retrotransposons-based DNA fingerprinting techniques. Theor. Appl. Genet., 98, 704–711.
Karataş, H., Ağaoğlu, Y. S. (2010). RAPD analysis of selected local Turkish grape cultivars (Vitis vinifera). Genet. Mol. Res., 9, 1980–1986.
Kumar, A., Bennetzen, J.L. (1999). Plant retrotransposons. Annu. Rev. Genet., 34, 479–532.
Labagnara, T., Bergamini, C., Caputo, A., Cirigliano, P. (2018). Vitis vinifera L. germplasm diversity: a genetic and ampelometric study in ancient vineyards in the South of Basilicata region (Italy). Vitis, 57, 1–8.
Lemanowicz, M., Krukowski, A. (2009). Comparisons of qualitative and quantitative issues in the fruit supply industries in The Netherlands, Poland, Greece, and Spain. J. Hortic. Sci. Biotech., 84, 13–17.
Lisek, J. (2008). Climatic factors affecting development and yielding of grapevine in central Poland. J. Fruit Ornam. Plant Res., 16, 285–293.
Lisek, J. (2010). Yielding and healthiness of selected grape cultivars for processing in central Poland. J. Fruit Ornam. Plant Res., 18, 265–272.
Martínez, L.E., Cavagnaro, P.F., Masuelli, R.W., Zúñiga, M. (2006). SSR-based assessment of genetic diversity in South American Vitis vinifera varieties. Plant Sci., 170, 1036–1044.
Meneghetti, S., Calò, A., Bavaresco, L. (2012a). A strategy to investigate the intravarietal genetic variability in Vitis vinifera L. for clones and biotypes identification and to correlate molecular profiles with morphological traits or geographic origins. Mol. Biotechnol., 52, 68–81.
Meneghetti, S., Costacurta, A., Morreale, G., Calò, A. (2012b). Study of intra-varietal genetic variability in grapevine cultivars by PCR-derived molecular markers and correlations with the geographic origins. Mol. Biotechnol., 50, 72–85.
Nordvin.by. (2018). Grapevine in the north of Belarus. Available: http://nordvin.by/severnii-rannii/ [date of access: 05.04.2018], [in Russian].
Moreno, S., Martín, J. P., Ortiz, J. M. (1998). Inter-simple sequence repeats for characterization of closely related grapevine germplasm. Euphytica, 101, 117–125.
Pelsy, F., Hocquigny, S., Moncada, X., Barbeau, G., Forget, D., Hinrichsen, P., Merdinoglu, D. (2010). An extensive study of the genetic diversity within seven French wine grape variety collections. Theor. Appl. Genet., 120, 1219–1231.
Prevost, A., Wilkinson, M.J., (1999). A new system of comparing PCR primers applied to ISSR fingerprinting of potato cultivars. Theor. Appl. Genet., 98, 107–112.
Riahi, L., Zoghlami, N., El-Heit, K., Laucou, V., Le Cunff, L., Boursiquot, J.M., Lacombe, T., Mliki, A., Ghorbel, A., This, P. (2010). Genetic structure and differentiation among grapevines (Vitis vinifera) accessions from Maghreb region. Genet. Resour. Crop Ev., 57, 255–272.
Sabir, A., Kafkas, S., Tangolar, S., Büyükalaca, S. (2008). Genetic relationship of grape cultivars by ISSR (Inter-simple squence repeats) markers. Eur. J. Hortic. Sci., 73, 84–88.
Sabir, A., Tangolar, S., Buyukalaca, S., Kafkas, S. (2009). Ampelographic and molecular diversity among grapevine (Vitis spp.) cultivars. Czech J. Genet. Plant., 45, 160–168.
Salayeva, S.J., Ojaghi, J.M., Pashayeva, A.N., Izzatullayeva, V.I., Akhundova, E.M., Akperov, Z.I. (2016). Genetic diversity of Vitis vinifera L. in Azerbaijan. Russ. J. Genet., 52, 391–397.
Seyedimoradi, H., Talebi, R., Hassani, D., Karami, F. (2012). Comparative genetic diversity analysis in Iranian local grapevine cultivars using ISSR and DAMD molecular markers. Environ. Exp. Biol., 10, 125–132.
Sękowski, B., Myśliwiec, R. (1996). 101 grapevine cultivars for growing in Poland. Wyd. Nauk. PWN, Warszawa, 263 pp. [in Polish].
Tarko, T., Duda-Chodak, A., Sroka, P., Satora, P., Jurasz, E. (2010) Polish wines: characteristics of cool-climate wines. J. Food Compos. Anal., 23, 463–468.
Theocharis, A., Hand, P., Pole, J., Cevik, V., Fisarakis, I., Henderson, J. (2010). Study of genetic diversity among inter-intraspecific hybrids and original grapevine varieties using AFLP molecular markers. Aust. J. Crop. Sci., 4, 1–8.
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Słowa kluczowe

Vitis spp.
interspecific crossings
germplasm resources
genetic distance

Prawa autorskie

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Możesz również Rozpocznij zaawansowane wyszukiwanie podobieństw dla tego artykułu.

[1] Abuzov, M. (2009). Atlas of northern grapevine. KFH Pitomnik. Smoleńsk, 165 pp. [in Russian].

[2] Alba, V., Anaclerio, A., Gasparro, M., Caputo, A.R., Montemurro, C., Blanco, A., Antonacci, D. (2016) Ampelographic and molecular characterisation of Aglianico accessions (Vitis vinifera L.) collected in southern Italy. S. Afr. J. Enol. Vitic., 32, 164–173.

[3] Argade, N.C., Tamhankar, S.A., Karibasappa, G.S., Patil, S.G., Rao, V.S. (2009). DNA profiling and assessment of genetic relationships among important seedless grape (Vitis vinifera) varieties in India using ISSR markers. J. Plant Biochem. Biot., 18, 45–51.

[4] Baneh, H.D., Mohammadi, S.A., Mahmoudzadeh, H., De Mattia, F., Labra, M. (2016). Analysis of SSR and AFLP markers to detect genetic diversity among selected clones of grapevine (Vitis vinifera L.) cv. Keshmeshi. S. Afr. J. Enol. Vitic., 30, 38–42.

[5] Botstein, D., White, R.L., Skolnick, M., Davis, R.W. (1980). Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am. J. Hum. Genet., 32, 314.

[6] Benjak, A., Ercisli, S., Vokurka, A., Maletić, E., Pejić, I. (2005). Genetic relationships among grapevine cultivars native to Croatia, Grece and Turkey. Vitis, 44, 73–77.

[7] Choudhary, R.S., Zagade, V., Khalakar, G.D., Singh, N.K. (2014). ISSR based genotypic differentiation of grape (Vitis vinifera L.). Bioscan, 9, 823.

[8] Cipriani, G., Spadotto, A., Jurman, I., Di Gaspero, G., Crespan, M., Meneghetti, S., Frare, E., Vignani, R., Cresti, M., Morgante, M., Pezotti, M., Pe, E., Policriti, A., Testolin, R. (2010). The SSR-based molecular profile of 1005 grapevine (Vitis vinifera L.) accessions uncovers new synonymy and parentages, and reveals a large admixture amongst varieties of different geographic origin. Theor. Appl. Genet., 121, 1569–1585.

[9] Dhane, M., Tamhankar, S.A., Patil, S.G., Karibasappa, G.S., Rao, V.S. (2006). Assessment of genetic diversity and relationships among some grape varieties using ISSR markers. J. Appl. Hortic., 8(1), 50–52.

[10] Dhanokar, V. M., Tamhankar, S.A., Patil, S.G., Rao, V.S. (2005). ISSR-PCR for assessment of genetic relationships among grape varieties cultivated in India. Vitis, 44, 127–131.

[11] Di Gaspero, G., Peterlunger, E., Testolin, R., Edwards, K.J., Cipriani, G. (2000). Conservation of microsatellite loci within the genus Vitis. Theor. Appl. Genet., 101, 301–308.

[12] Dong, Z., Liu, W., Li, X., Tan, W., Zhao, Q., Wang, M., Ren, R., Ma, X., Tang, X. (2018). Genetic relationships of 34 grapevine varieties and construction of molecular fingerprints by SSR markers. Biotechnol. Biotec. EQ, 1–9, https://doi.org/10.1080/13102818.2018.1450162

[13] D’Onofrio, C., De Lorenzis, G., Giordani, T., Natali, L., Cavallini, A., Scalabrelli, G. (2010). Retrotransposon-based molecular markers for grapevine species and cultivars identification. Tree Genet. Genomes., 6, 451–466.

[14] Fanizza, G., Colonna, G., Resta, P., Ferrara, G. (1999). The effect of the number of RAPD markers on the evaluation of genotypic distances in Vitis vinifera. Euphytica, 107, 45–50.

[15] Gąstoł, M. (2015). Vineyard performance and fruit quality of some interspecific grapevine cultivars in cool climate conditions. Folia Hort., 27, 21–31.

[16] Guo, D., Zhang, J., Liu, C., Zhang, G., Li, M., Zhang, Q. (2012). Genetic variability and relationships between and within grape cultivated varieties and wild species based on SRAP markers. Tree Genet. Genomes, 8, 789–800.

[17] Halász, G., Veres, A., Kozma, P., Kiss, E., Balogh, A., Galli, Z., Szőke, A., Hoffmann, S., Heszky, L. (2005). Microsatellite fingerprinting of grapevine (Vitis vinifera L.) varieties of the Carpathian Basin. Vitis, 44, 173–180.

[18] Herrera, R., Cares, V., Wilkinson, M.J., Caligari, P.D.S. (2002). Characterisation of genetic variation between Vitis vinifera cultivars from central Chile using RAPD and Inter Simple Sequence Repeat markers. Euphytica, 124, 139–145.

[19] HORT 3040. (2016). A review of cold climate grape cultivars. Iowa State University, Extension and Outreach. Available: <https://store.extension.iastate.edu/Product/A-Review-of-Cold-Climate-Grape-Cultivars-pdf> [date of access: 04.04.2018]

[20] Huang, H., Lu, J., Ren, Z., Hunter, W., Dowd, S.E., Dang, P. (2011). Mining and validating grape (Vitis L.) ESTs to develop EST-SSR markers for genotyping and mapping. Mol. Breeding, 28, 241–254.

[21] Jahnke, G., Májer, J., Lakatos, A., Molnár, J. G., Deák, E., Stefanovits-Bányai, É., Varga, P., (2009). Isoenzyme and microsatellite analysis of Vitis vinifera L. varieties from the Hungarian grape germplasm. Sci. Hortic.-Amsterdam, 120, 213–221.

[22] Jing, Z., Wang, X. (2013). Genetic relationship between Chinese wild Vitis species and American and European cultivars based on ISSR markers. Biochem. Syst. Ecol., 46, 120–126.

[23] Kalendar, R., Grob, T., Regina, M., Suoniemi, A., Schulman, A. (1999). IRAP and REMAP: two new retrotransposons-based DNA fingerprinting techniques. Theor. Appl. Genet., 98, 704–711.

[24] Karataş, H., Ağaoğlu, Y. S. (2010). RAPD analysis of selected local Turkish grape cultivars (Vitis vinifera). Genet. Mol. Res., 9, 1980–1986.

[25] Kumar, A., Bennetzen, J.L. (1999). Plant retrotransposons. Annu. Rev. Genet., 34, 479–532.

[26] Labagnara, T., Bergamini, C., Caputo, A., Cirigliano, P. (2018). Vitis vinifera L. germplasm diversity: a genetic and ampelometric study in ancient vineyards in the South of Basilicata region (Italy). Vitis, 57, 1–8.

[27] Lemanowicz, M., Krukowski, A. (2009). Comparisons of qualitative and quantitative issues in the fruit supply industries in The Netherlands, Poland, Greece, and Spain. J. Hortic. Sci. Biotech., 84, 13–17.

[28] Lisek, J. (2008). Climatic factors affecting development and yielding of grapevine in central Poland. J. Fruit Ornam. Plant Res., 16, 285–293.

[29] Lisek, J. (2010). Yielding and healthiness of selected grape cultivars for processing in central Poland. J. Fruit Ornam. Plant Res., 18, 265–272.

[30] Martínez, L.E., Cavagnaro, P.F., Masuelli, R.W., Zúñiga, M. (2006). SSR-based assessment of genetic diversity in South American Vitis vinifera varieties. Plant Sci., 170, 1036–1044.

[31] Meneghetti, S., Calò, A., Bavaresco, L. (2012a). A strategy to investigate the intravarietal genetic variability in Vitis vinifera L. for clones and biotypes identification and to correlate molecular profiles with morphological traits or geographic origins. Mol. Biotechnol., 52, 68–81.

[32] Meneghetti, S., Costacurta, A., Morreale, G., Calò, A. (2012b). Study of intra-varietal genetic variability in grapevine cultivars by PCR-derived molecular markers and correlations with the geographic origins. Mol. Biotechnol., 50, 72–85.

[33] Nordvin.by. (2018). Grapevine in the north of Belarus. Available: http://nordvin.by/severnii-rannii/ [date of access: 05.04.2018], [in Russian].

[34] Moreno, S., Martín, J. P., Ortiz, J. M. (1998). Inter-simple sequence repeats for characterization of closely related grapevine germplasm. Euphytica, 101, 117–125.

[35] Pelsy, F., Hocquigny, S., Moncada, X., Barbeau, G., Forget, D., Hinrichsen, P., Merdinoglu, D. (2010). An extensive study of the genetic diversity within seven French wine grape variety collections. Theor. Appl. Genet., 120, 1219–1231.

[36] Prevost, A., Wilkinson, M.J., (1999). A new system of comparing PCR primers applied to ISSR fingerprinting of potato cultivars. Theor. Appl. Genet., 98, 107–112.

[37] Riahi, L., Zoghlami, N., El-Heit, K., Laucou, V., Le Cunff, L., Boursiquot, J.M., Lacombe, T., Mliki, A., Ghorbel, A., This, P. (2010). Genetic structure and differentiation among grapevines (Vitis vinifera) accessions from Maghreb region. Genet. Resour. Crop Ev., 57, 255–272.

[38] Sabir, A., Kafkas, S., Tangolar, S., Büyükalaca, S. (2008). Genetic relationship of grape cultivars by ISSR (Inter-simple squence repeats) markers. Eur. J. Hortic. Sci., 73, 84–88.

[39] Sabir, A., Tangolar, S., Buyukalaca, S., Kafkas, S. (2009). Ampelographic and molecular diversity among grapevine (Vitis spp.) cultivars. Czech J. Genet. Plant., 45, 160–168.

[40] Salayeva, S.J., Ojaghi, J.M., Pashayeva, A.N., Izzatullayeva, V.I., Akhundova, E.M., Akperov, Z.I. (2016). Genetic diversity of Vitis vinifera L. in Azerbaijan. Russ. J. Genet., 52, 391–397.

[41] Seyedimoradi, H., Talebi, R., Hassani, D., Karami, F. (2012). Comparative genetic diversity analysis in Iranian local grapevine cultivars using ISSR and DAMD molecular markers. Environ. Exp. Biol., 10, 125–132.

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