Cytogenetic identification of locus-specific unstable trinucleotide repeats in selected Bovidae species and Sus scrofa domestica
Barbara Danielak-Czech
Departament of Animal Cytogenetics and Molecular Genetics National Institute of Animal Production, Krakowska 1, 32-083 Balice/KrakówMarek Babicz
Department of Pig Breeding and Production Technology University of Life Sciences in Lublin, Akademicka 13, 20-950 LublinAnna Kozubska-Sobocińska
Departament of Animal Cytogenetics and Molecular Genetics National Institute of Animal Production, Krakowska 1, 32-083 Balice/KrakówBarbara Rejduch
Departament of Animal Cytogenetics and Molecular Genetics National Institute of Animal Production, Krakowska 1, 32-083 Balice/KrakówKatarzyna Kruczek
Departament of Animal Cytogenetics and Molecular Genetics National Institute of Animal Production, Krakowska 1, 32-083 Balice/KrakówAbstrakt
Applying in situ the PCR method and GTG/QFQ/DAPI banding techniques, the cytogenetic location of CCG-repeats of the human FRM1 gene was assigned to structurally unstable
heterosome X regions of cattle – BTA Xp13, sheep – OAR Xq22, goats – CHI Xq22 and domestic pig – SSC Xq26. The results obtained confirmed homology and conservation of regulatory sequence in 5’UTR region of mammalian FRM1 gene, which can be a basis for further comparative, evolutionary and phylogenetic studies.
Słowa kluczowe:
Bovidae, Sus scrofa domestica, chromosome X fragility, FRM1 gene, trinucleotide tandem repeatsBibliografia
Auer R.L., Dighiero G., Goldin L.R., Syndercombe-Court D., Jones C., McElwaine S., Newland A.C., Fegan C.D., Caporaso N., Cotter F.E., 2006. Trinucleotide repeat dynamic mutation
identifying susceptibility in familial and sporadic chronic lymphocytic leukaemia. Br. J. Haematol. 136, 73–79.
Danielak-Czech B., Kaczor U., Sharan M., 2010. Cytomolecular analysis of chromosome X fragility in subfertile sheep. Ukrainian Academy of Agrarian Sciences. Anim. Biol. 12, 234–239.
Danielak-Czech B., Kozubska-Sobocińska A., Babicz M,. Rejduch B., 2011. Heterosome X premutation structural changes associated with fertility of Romanov sheep. Annales UMCS, sec.
EE, Zootechnica 29 (3), 28–34.
Danielak-Czech B., Słota E. 2006. Cytogenetic localization of FRM1 gene in farm animals. 17th European Colloquium on Animal Cytogenetics and Gene Mapping, Lizbona, 18-21 June
2006. Book of abstracts, 28.
Deelen W., Bakker., Halley D.J.J., Oostra B.A., 1994. Conservation of CGG region in FRM1 gene in mammals. Am. J. Med. Genet. 51, 513–516.
Di Berardino D., Di Meo G.P., Gallagher D.S., Hades H., Iannuzzi L., 2001. ISCNDB 2000. International System for Nomenclature of Domestic Bovids. Cytogenet. Cell Genet. 92, 283–299.
Hagerman R.J., 2006. Lessons from fragile X regarding neurobiology, autism, and neurodegeneration. J. Dev. Behav. Pediatr. 27, 63–74.
Gustavsson I., 1988. Committee for the Standardized Karyotype of the Domestic Pig. Standard karyotype of the domestic pig. Hereditas. 109, 151–157.
Iannuzzi L., Di Meo G.P., Perucatti A., Incarnato D., Schibler R., Cribiu E.P., 2000. Comparative FISH mapping of bovid X chromosome reveals homologies and divergences between the subfamilies Bovinae and Caprinae. Cytogenet. Cell Genet. 89, 171–176.
Kaczor U., Danielak-Czech B., Sharan M., 2009. Comparative mapping of the CGG tandem repeats of the human FRM1 gene in farm animals. Ukrainian Academy of Agrarian Sciences.
Anim. Biol. 11, 242–246.
Kremer E.J., Pritchard M., Lynch M., Yu S., Holman K., Baker E., Warren S.T., Schlessinger D., Sutherland G.R., Richards R.I., 1991. Mapping of DNA instability at fragile X to a trinucleotide
repeat sequence p(CCG)n. Science 252, 1711–1714.
Kozubska-Sobocińska A., 2009. Konserwatyzm genetyczny chromosomów płci w rodzinie Bovidae. Wiad. Zoot. 3, 17–23.
Kozubska-Sobocińska A., Słota E., Kościelny M. 2002. Chromosome X polymorphism in selected species of Bovidae. Anim. Sci. Pap. Rep. 20, 143-148.
Kozubska-Sobocińska A., Ząbek T., Słota E., Kaczor U., 2007. Comparison of GTG-banded karyotypes and microsatellite sequences in some species of the Bovidae and Cervidae families.
J. Anim. Feed Sci. 16, 567–578.
Madsen L.B., Thomsen B., Solvsten C.A.E., Bendixen C., Fredholm M., Jorgensen A.L., Nielsen A.L., 2007. Identification of the porcine homologous of human disease causing trinucleotide
repeat sequences. Neurogenetics 8, 207–218.
Pearson C.E., Edamura K.N., Cleary J.D., 2005. Repeat instability: mechanisms of dynamic mutations. Nat. Rev. Genet. 6, 729–742.
Słota E., Bugno M., Kozubska-Sobocińska A., Danielak-Czech B., 2007a. Molekularne metody w analizach cytogenetycznych genomu zwierząt gospodarskich. Przegl. Hod. 6, 22–25.
Słota E., Bugno M., Rejduch B., Kozubska-Sobocińska A., Danielak-Czech B., 2007b. Sex chromosome aberrations in animals – evolution of diagnostic methods. Konf. Nauk. “Investigations
on animal genome and their utilization in science and modern breeding”. Balice, 19.06.2007. Mat. konf., 15–16.
Troyer D.L., Goad D.W., Xie H., Rohrer G.A., Alexander L.J., Beattie C.W., 1994. Use of direct in situ single-copy (DISC) PCR to physically map five porcine microsatellites. Cytogenet.
Cell Genet. 67, 199–204.
Wittenberger M.D., Hagerman R.J., Sherman S.L., McConckie-Rosell A., Welt C.K., Rebar R.W., Corrigan E.C., Simpson J.L., Nelson L.M., 2007. The FRM1 premutation and reproduction.
Fertil. Steril. 87, 456–465.
Usdin K., 2008. The biological effects of simple tandem repeats: Lessons from the repeat expansion diseases. Genome Res. 18, 1011–1019.
identifying susceptibility in familial and sporadic chronic lymphocytic leukaemia. Br. J. Haematol. 136, 73–79.
Danielak-Czech B., Kaczor U., Sharan M., 2010. Cytomolecular analysis of chromosome X fragility in subfertile sheep. Ukrainian Academy of Agrarian Sciences. Anim. Biol. 12, 234–239.
Danielak-Czech B., Kozubska-Sobocińska A., Babicz M,. Rejduch B., 2011. Heterosome X premutation structural changes associated with fertility of Romanov sheep. Annales UMCS, sec.
EE, Zootechnica 29 (3), 28–34.
Danielak-Czech B., Słota E. 2006. Cytogenetic localization of FRM1 gene in farm animals. 17th European Colloquium on Animal Cytogenetics and Gene Mapping, Lizbona, 18-21 June
2006. Book of abstracts, 28.
Deelen W., Bakker., Halley D.J.J., Oostra B.A., 1994. Conservation of CGG region in FRM1 gene in mammals. Am. J. Med. Genet. 51, 513–516.
Di Berardino D., Di Meo G.P., Gallagher D.S., Hades H., Iannuzzi L., 2001. ISCNDB 2000. International System for Nomenclature of Domestic Bovids. Cytogenet. Cell Genet. 92, 283–299.
Hagerman R.J., 2006. Lessons from fragile X regarding neurobiology, autism, and neurodegeneration. J. Dev. Behav. Pediatr. 27, 63–74.
Gustavsson I., 1988. Committee for the Standardized Karyotype of the Domestic Pig. Standard karyotype of the domestic pig. Hereditas. 109, 151–157.
Iannuzzi L., Di Meo G.P., Perucatti A., Incarnato D., Schibler R., Cribiu E.P., 2000. Comparative FISH mapping of bovid X chromosome reveals homologies and divergences between the subfamilies Bovinae and Caprinae. Cytogenet. Cell Genet. 89, 171–176.
Kaczor U., Danielak-Czech B., Sharan M., 2009. Comparative mapping of the CGG tandem repeats of the human FRM1 gene in farm animals. Ukrainian Academy of Agrarian Sciences.
Anim. Biol. 11, 242–246.
Kremer E.J., Pritchard M., Lynch M., Yu S., Holman K., Baker E., Warren S.T., Schlessinger D., Sutherland G.R., Richards R.I., 1991. Mapping of DNA instability at fragile X to a trinucleotide
repeat sequence p(CCG)n. Science 252, 1711–1714.
Kozubska-Sobocińska A., 2009. Konserwatyzm genetyczny chromosomów płci w rodzinie Bovidae. Wiad. Zoot. 3, 17–23.
Kozubska-Sobocińska A., Słota E., Kościelny M. 2002. Chromosome X polymorphism in selected species of Bovidae. Anim. Sci. Pap. Rep. 20, 143-148.
Kozubska-Sobocińska A., Ząbek T., Słota E., Kaczor U., 2007. Comparison of GTG-banded karyotypes and microsatellite sequences in some species of the Bovidae and Cervidae families.
J. Anim. Feed Sci. 16, 567–578.
Madsen L.B., Thomsen B., Solvsten C.A.E., Bendixen C., Fredholm M., Jorgensen A.L., Nielsen A.L., 2007. Identification of the porcine homologous of human disease causing trinucleotide
repeat sequences. Neurogenetics 8, 207–218.
Pearson C.E., Edamura K.N., Cleary J.D., 2005. Repeat instability: mechanisms of dynamic mutations. Nat. Rev. Genet. 6, 729–742.
Słota E., Bugno M., Kozubska-Sobocińska A., Danielak-Czech B., 2007a. Molekularne metody w analizach cytogenetycznych genomu zwierząt gospodarskich. Przegl. Hod. 6, 22–25.
Słota E., Bugno M., Rejduch B., Kozubska-Sobocińska A., Danielak-Czech B., 2007b. Sex chromosome aberrations in animals – evolution of diagnostic methods. Konf. Nauk. “Investigations
on animal genome and their utilization in science and modern breeding”. Balice, 19.06.2007. Mat. konf., 15–16.
Troyer D.L., Goad D.W., Xie H., Rohrer G.A., Alexander L.J., Beattie C.W., 1994. Use of direct in situ single-copy (DISC) PCR to physically map five porcine microsatellites. Cytogenet.
Cell Genet. 67, 199–204.
Wittenberger M.D., Hagerman R.J., Sherman S.L., McConckie-Rosell A., Welt C.K., Rebar R.W., Corrigan E.C., Simpson J.L., Nelson L.M., 2007. The FRM1 premutation and reproduction.
Fertil. Steril. 87, 456–465.
Usdin K., 2008. The biological effects of simple tandem repeats: Lessons from the repeat expansion diseases. Genome Res. 18, 1011–1019.
Barbara Danielak-Czech
Departament of Animal Cytogenetics and Molecular Genetics National Institute of Animal Production, Krakowska 1, 32-083 Balice/Kraków
Departament of Animal Cytogenetics and Molecular Genetics National Institute of Animal Production, Krakowska 1, 32-083 Balice/Kraków
Marek Babicz
Department of Pig Breeding and Production Technology University of Life Sciences in Lublin, Akademicka 13, 20-950 Lublin
Department of Pig Breeding and Production Technology University of Life Sciences in Lublin, Akademicka 13, 20-950 Lublin
Anna Kozubska-Sobocińska
Departament of Animal Cytogenetics and Molecular Genetics National Institute of Animal Production, Krakowska 1, 32-083 Balice/Kraków
Departament of Animal Cytogenetics and Molecular Genetics National Institute of Animal Production, Krakowska 1, 32-083 Balice/Kraków
Barbara Rejduch
Departament of Animal Cytogenetics and Molecular Genetics National Institute of Animal Production, Krakowska 1, 32-083 Balice/Kraków
Departament of Animal Cytogenetics and Molecular Genetics National Institute of Animal Production, Krakowska 1, 32-083 Balice/Kraków
Katarzyna Kruczek
Departament of Animal Cytogenetics and Molecular Genetics National Institute of Animal Production, Krakowska 1, 32-083 Balice/Kraków
Departament of Animal Cytogenetics and Molecular Genetics National Institute of Animal Production, Krakowska 1, 32-083 Balice/Kraków
Licencja
Od 2022 r. artykuły są udostępniane na zasadach licencji Creative Commons uznanie autorstwa 4.0 międzynarodowa (CC BY 4.0). Artykuły opublikowane przed 2022 r. są dostępne na zasadach licencji Creative Commons uznanie autorstwa – użycie niekomercyjne – bez utworów zależnych 4.0 międzynarodowa (CC BY-NC-ND 4.0).
Przysłanie artykułu do redakcji oznacza, że nie był on opublikowany wcześniej, nie jest rozpatrywany do publikacji w innych wydawnictwach.
Autor podpisuje oświadczenie o oryginalności dzieła i wkładzie poszczególnych osób.
